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author:"Ferreira Silva M"
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Cryo-EM structure of the Toxoplasma gondii respiratory chain complex III inhibited by ELQ-300
Release date: June 18, 2025
Resolution: 1.8 Å
EM Method: Single-particle
Fitted PDBs: 9g9t
Q-score: -0.015

MacLean AE, Shikha S, Ferreira Silva M, Gramelspacher MJ, Nilsen A, Liebman KM, Pou S, Winter RW, Meir A, Riscoe MK, Doggett JS, Sheiner L, Muhleip A

Nat Struct Mol Biol (2025) [ Pubmed: 40389671 DOI: doi:10.1038/s41594-025-01531-7 ]

Sample:
  • Transmembrane protein (11 kDa, Protein from Toxoplasma gondii)
  • Water (18 Da, Ligand)
  • Zinc ion (65 Da, Ligand)
  • Ubiquinol-cytochrome c reductase (26 kDa, Protein from Toxoplasma gondii)
  • Cardiolipin (1 kDa, Ligand)
  • Cytochrome c1, heme protein (46 kDa, Protein from Toxoplasma gondii)
  • Putative ubiquinol cytochrome c oxidoreductase (54 kDa, Protein from Toxoplasma gondii)
  • Cytochrome b (40 kDa, Protein from Toxoplasma gondii)
  • Protoporphyrin ix containing fe (616 Da, Ligand)
  • Putative peptidase m16 family protein (56 kDa, Protein from Toxoplasma gondii)
  • Transmembrane protein (15 kDa, Protein from Toxoplasma gondii)
  • Alpha-mpp (62 kDa, Protein from Toxoplasma gondii)
  • 6-chloranyl-7-methoxy-2-methyl-3-[4-[4-(trifluoromethyloxy)phenoxy]phenyl]-1~{h}-quinolin-4-one (475 Da, Ligand)
  • Magnesium ion (24 Da, Ligand)
  • Qcr8/tggt1_227910 (14 kDa, Protein from Toxoplasma gondii)
  • Putative ubiquinol-cytochrome c reductase hinge protein (10 kDa, Protein from Toxoplasma gondii)
  • Transmembrane protein (9 kDa, Protein from Toxoplasma gondii)
  • 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
  • Heme c (618 Da, Ligand)
  • Ubiquinol-cytochrome c family reductase uqcrx/qcr9-like protein (15 kDa, Protein from Toxoplasma gondii)
  • Cytochrome bc1 complex from toxoplasma gondii (Complex from Toxoplasma gondii)
[Show more]
3D View
Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
Release date: June 11, 2025
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 9hqv
Q-score: 0.431

Shikha S, Tobiasson V, Ferreira Silva M, Ovciarikova J, Beraldi D, Muhleip A, Sheiner L

Nat Commun (2025) 16 pp. 817-817 [ Pubmed: 39827269 DOI: doi:10.1038/s41467-025-56057-9 ]

Sample:
  • Ms45 (59 kDa, Protein from Toxoplasma gondii)
  • Putative 30s ribosomal protein s16 (19 kDa, Protein from Toxoplasma gondii)
  • Putative mitochondrial ribosomal protein s6-2 (19 kDa, Protein from Toxoplasma gondii)
  • Mitochondrial mrna-processing protein cox24 c-terminal domain-containing protein (30 kDa, Protein from Toxoplasma gondii)
  • Ms34 (34 kDa, Protein from Toxoplasma gondii)
  • Ms128 (34 kDa, Protein from Toxoplasma gondii)
  • Unk1 (1 kDa, Protein from Toxoplasma gondii)
  • Small ribosomal subunit protein ms29 (63 kDa, Protein from Toxoplasma gondii)
  • Ribosomal protein, bs21m (28 kDa, Protein from Toxoplasma gondii)
  • Acylphosphatase-like domain-containing protein (27 kDa, Protein from Toxoplasma gondii)
  • Chain uq (2 kDa, Protein from Toxoplasma gondii)
  • Ssu-5 (23 kDa, RNA from Toxoplasma gondii)
  • Ssu-8 (8 kDa, RNA from Toxoplasma gondii)
  • Ssu-16 (10 kDa, RNA from Toxoplasma gondii)
  • Macro domain-containing protein (75 kDa, Protein from Toxoplasma gondii)
  • Rap domain-containing protein (86 kDa, Protein from Toxoplasma gondii)
  • Ms117 (60 kDa, Protein from Toxoplasma gondii)
  • Ssu-17 (18 kDa, RNA from Toxoplasma gondii)
  • Putative ribosomal protein s14 (13 kDa, Protein from Toxoplasma gondii)
  • Ms124 (30 kDa, Protein from Toxoplasma gondii)
  • Unk2 (541 Da, Protein from Toxoplasma gondii)
  • Mitochondrial ribosomal protein, ms26 (51 kDa, Protein from Toxoplasma gondii)
  • Ms121 (34 kDa, Protein from Toxoplasma gondii)
  • Mitochondrial small ribosomal subunit from toxoplasma gondii (Complex from Toxoplasma gondii)
  • Ms75 (3 kDa, Protein from Toxoplasma gondii)
  • Ms125 (100 kDa, Protein from Toxoplasma gondii)
  • Ssu-19 (3 kDa, RNA from Toxoplasma gondii)
  • Chain uo (2 kDa, Protein from Toxoplasma gondii)
  • Putative 30s ribosomal protein s5 (127 kDa, Protein from Toxoplasma gondii)
  • Ms137 (40 kDa, Protein from Toxoplasma gondii)
  • Ms23 (41 kDa, Protein from Toxoplasma gondii)
  • Adenosine-5'-triphosphate (507 Da, Ligand)
  • Ssu-1 (29 kDa, RNA from Toxoplasma gondii)
  • Ms119 (28 kDa, Protein from Toxoplasma gondii)
  • Chain uj (5 kDa, Protein from Toxoplasma gondii)
  • Ms92 (17 kDa, Protein from Toxoplasma gondii)
  • Magnesium ion (24 Da, Ligand)
  • Chain uc (9 kDa, RNA from Toxoplasma gondii)
  • Putative ribosomal protein s9 (57 kDa, Protein from Toxoplasma gondii)
  • Ms136 (50 kDa, Protein from Toxoplasma gondii)
  • Unk4 (6 kDa, Protein from Toxoplasma gondii)
  • Unk3 (869 Da, Protein from Toxoplasma gondii)
  • Atp-dependent clp protease proteolytic subunit,related protein (116 kDa, Protein from Toxoplasma gondii)
  • Ms132 (19 kDa, Protein from Toxoplasma gondii)
  • Arg-ala-glu-leu-val-ala-ala-gln-val-arg-glu-lys-leu-ala-ile-lys-met-ala-asn-ala-leu-ala (2 kDa, Protein from Toxoplasma gondii)
  • Rap domain-containing protein (168 kDa, Protein from Toxoplasma gondii)
  • Ssu-12 (8 kDa, RNA from Toxoplasma gondii)
  • Unknown peptide (1 kDa, Protein from Toxoplasma gondii)
  • Chain un (2 kDa, Protein from Toxoplasma gondii)
  • Us10m (26 kDa, Protein from Toxoplasma gondii)
  • Ssu-15 (5 kDa, RNA from Toxoplasma gondii)
  • Zinc ion (65 Da, Ligand)
  • Pentatricopeptide repeat domain-containing protein (74 kDa, Protein from Toxoplasma gondii)
  • Gly-arg-ser-lys-val-leu-ile-arg-arg-leu-lys-glu-arg-ala-lys-lys-glu-ala-glu-lys-lys-ala (2 kDa, Protein from Toxoplasma gondii)
  • Ssu-21 (17 kDa, RNA from Toxoplasma gondii)
  • Ssu-10 (29 kDa, RNA from Toxoplasma gondii)
  • Ms133 (31 kDa, Protein from Toxoplasma gondii)
  • Ssu-7 (8 kDa, RNA from Toxoplasma gondii)
  • Trna e-site (6 kDa, RNA from Toxoplasma gondii)
  • Chain up (2 kDa, Protein from Toxoplasma gondii)
  • Ssu-13 (23 kDa, RNA from Toxoplasma gondii)
  • Putative ribosomal protein s11 (43 kDa, Protein from Toxoplasma gondii)
  • Ms120 (75 kDa, Protein from Toxoplasma gondii)
  • Ssu-11 (36 kDa, RNA from Toxoplasma gondii)
  • Dna double-strand break repair rad50 atpase (69 kDa, Protein from Toxoplasma gondii)
  • Ssu-6 (38 kDa, RNA from Toxoplasma gondii)
  • Ssu-18 (10 kDa, RNA from Toxoplasma gondii)
  • Us13m (12 kDa, Protein from Toxoplasma gondii)
  • Ssu-2 (9 kDa, RNA from Toxoplasma gondii)
  • Ms131 (48 kDa, Protein from Toxoplasma gondii)
  • Ribosomal protein, us2m (18 kDa, Protein from Toxoplasma gondii)
  • Ssu-9 (17 kDa, RNA from Toxoplasma gondii)
  • Ms135 (21 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein s8 (14 kDa, Protein from Toxoplasma gondii)
  • Ssu-3 (7 kDa, RNA from Toxoplasma gondii)
  • Ssu-4 (15 kDa, RNA from Toxoplasma gondii)
  • Ms138 (44 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein s17 (14 kDa, Protein from Toxoplasma gondii)
  • Ssu-20 (7 kDa, RNA from Toxoplasma gondii)
  • Chch domain-containing protein (16 kDa, Protein from Toxoplasma gondii)
  • Enoyl-coa hydratase/isomerase family protein (80 kDa, Protein from Toxoplasma gondii)
  • Putative 30s ribosomal protein s12 (66 kDa, Protein from Toxoplasma gondii)
  • Small ribosomal subunit protein ms35 mitochondrial conserved domain-containing protein (63 kDa, Protein from Toxoplasma gondii)
  • Ap2 domain transcription factor ap2ix-6 (47 kDa, Protein from Toxoplasma gondii)
  • Dnaj domain-containing protein (25 kDa, Protein from Toxoplasma gondii)
  • Chain uh (5 kDa, Protein from Toxoplasma gondii)
  • Thioredoxin domain-containing protein (102 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein s18 (84 kDa, Protein from Toxoplasma gondii)
  • Putative 30s ribosomal protein s15 (44 kDa, Protein from Toxoplasma gondii)
  • Homeodomain-like containing protein (66 kDa, Protein from Toxoplasma gondii)
  • Ssu-14 (7 kDa, RNA from Toxoplasma gondii)
[Show more]
3D View
Cryo-EM structure of the large subunit of the mitochondrial ribosome from Toxoplasma gondii
Release date: June 11, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9i05
Q-score: 0.611

Shikha S, Tobiasson V, Ferreira Silva M, Ovciarikova J, Beraldi D, Muhleip A, Sheiner L

Nat Commun (2025) 16 pp. 817-817 [ Pubmed: 39827269 DOI: doi:10.1038/s41467-025-56057-9 ]

Sample:
  • Large ribosomal subunit protein ml54 (55 kDa, Protein from Toxoplasma gondii)
  • Lsu-20 (4 kDa, RNA from Toxoplasma gondii)
  • Ml132 (22 kDa, Protein from Toxoplasma gondii)
  • Lsu-16 (3 kDa, RNA from Toxoplasma gondii)
  • Lsu-19 (9 kDa, RNA from Toxoplasma gondii)
  • Lsu-29 (25 kDa, RNA from Toxoplasma gondii)
  • Ml152 (31 kDa, Protein from Toxoplasma gondii)
  • Lsu-24 (15 kDa, RNA from Toxoplasma gondii)
  • Transmembrane protein (36 kDa, Protein from Toxoplasma gondii)
  • Rap domain-containing protein (73 kDa, Protein from Toxoplasma gondii)
  • Bl27m (43 kDa, Protein from Toxoplasma gondii)
  • Macro domain-containing protein (68 kDa, Protein from Toxoplasma gondii)
  • Ml144 (103 kDa, Protein from Toxoplasma gondii)
  • 50s ribosomal protein l19, chloroplastic (84 kDa, Protein from Toxoplasma gondii)
  • Lsu-5 (29 kDa, RNA from Toxoplasma gondii)
  • Putative 50s ribosomal protein l13 (26 kDa, Protein from Toxoplasma gondii)
  • Ml130 (59 kDa, Protein from Toxoplasma gondii)
  • Ml157 (34 kDa, Protein from Toxoplasma gondii)
  • Lsu-27 (8 kDa, RNA from Toxoplasma gondii)
  • Bl36m (22 kDa, Protein from Toxoplasma gondii)
  • Ap2 domain transcription factor ap2iv-1 (47 kDa, Protein from Toxoplasma gondii)
  • Lsu-12 (57 kDa, RNA from Toxoplasma gondii)
  • Ribosomal protein l9, n-terminal domain-containing protein (54 kDa, Protein from Toxoplasma gondii)
  • Large ribosomal subunit protein ul23m (29 kDa, Protein from Toxoplasma gondii)
  • Bir protein (32 kDa, Protein from Toxoplasma gondii)
  • Putative 50s ribosomal protein l17 (29 kDa, Protein from Toxoplasma gondii)
  • Large ribosomal subunit protein bl21m (77 kDa, Protein from Toxoplasma gondii)
  • Lsu-15 (8 kDa, RNA from Toxoplasma gondii)
  • Peptidyl-prolyl cis-trans isomerase (31 kDa, Protein from Toxoplasma gondii)
  • Lsu-11 (3 kDa, RNA from Toxoplasma gondii)
  • Putative 60s ribosomal protein l27 (10 kDa, Protein from Toxoplasma gondii)
  • Mitochondrial ribososome from toxoplasma gondii (Complex from Toxoplasma gondii)
  • Ml155 (34 kDa, Protein from Toxoplasma gondii)
  • Putative lsu ribosomal protein l2p (62 kDa, Protein from Toxoplasma gondii)
  • Lsu-4 (10 kDa, RNA from Toxoplasma gondii)
  • Lsu-7 (9 kDa, RNA from Toxoplasma gondii)
  • Ribosomal l25 family protein (2 kDa, Protein from Toxoplasma gondii)
  • Lsu-10 (18 kDa, RNA from Toxoplasma gondii)
  • Putative ribosomal protein l28 (33 kDa, Protein from Toxoplasma gondii)
  • Duf6832 domain-containing protein (56 kDa, Protein from Toxoplasma gondii)
  • Lsu-25 (14 kDa, RNA from Toxoplasma gondii)
  • Rrm domain-containing protein (75 kDa, Protein from Toxoplasma gondii)
  • Lsu-26 (16 kDa, RNA from Toxoplasma gondii)
  • Lsu-3 (8 kDa, RNA from Toxoplasma gondii)
  • Lsu-9 (11 kDa, RNA from Toxoplasma gondii)
  • Ribosomal l25 family protein (80 kDa, Protein from Toxoplasma gondii)
  • Ribosomal l22p/l17e protein (64 kDa, Protein from Toxoplasma gondii)
  • Putative 50s ribosomal protein l33 (15 kDa, Protein from Toxoplasma gondii)
  • Large ribosomal subunit protein ul4m (91 kDa, Protein from Toxoplasma gondii)
  • Large ribosomal subunit protein ul29m (28 kDa, Protein from Toxoplasma gondii)
  • Putative 50s ribosomal protein l16 (21 kDa, Protein from Toxoplasma gondii)
  • Bl35m (39 kDa, Protein from Toxoplasma gondii)
  • Zinc ion (65 Da, Ligand)
  • Rna recognition motif-containing protein (27 kDa, Protein from Toxoplasma gondii)
  • Ribosomal protein l15, putative (71 kDa, Protein from Toxoplasma gondii)
  • Fas1 domain-containing protein (76 kDa, Protein from Toxoplasma gondii)
  • Lsu-6 (14 kDa, RNA from Toxoplasma gondii)
  • Large ribosomal subunit protein ul24c (25 kDa, Protein from Toxoplasma gondii)
  • Ml159 (17 kDa, Protein from Toxoplasma gondii)
  • Fe2/s2 (inorganic) cluster (175 Da, Ligand)
  • Lsu-31 (4 kDa, RNA from Toxoplasma gondii)
  • Rap domain-containing protein (69 kDa, Protein from Toxoplasma gondii)
  • Hect-domain (ubiquitin-transferase) domain-containing protein (43 kDa, Protein from Toxoplasma gondii)
  • Lsu-30 (9 kDa, RNA from Toxoplasma gondii)
  • Rap domain-containing protein (98 kDa, Protein from Toxoplasma gondii)
  • Ap2 domain transcription factor ap2viib-2 (62 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein l11 (20 kDa, Protein from Toxoplasma gondii)
  • Ml53 (24 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein l20 (14 kDa, Protein from Toxoplasma gondii)
  • Lsu-2 (11 kDa, RNA from Toxoplasma gondii)
  • Ml153 (48 kDa, Protein from Toxoplasma gondii)
  • Lsu-18 (30 kDa, RNA from Toxoplasma gondii)
  • Lsu-32 (14 kDa, RNA from Toxoplasma gondii)
  • Ml146 (121 kDa, Protein from Toxoplasma gondii)
  • Lsu-22 (29 kDa, RNA from Toxoplasma gondii)
  • Lsu-13 (22 kDa, RNA from Toxoplasma gondii)
  • Ribosomal protein l46 (67 kDa, Protein from Toxoplasma gondii)
  • Chain ua (30 kDa, Protein from Toxoplasma gondii)
  • Ml160 (16 kDa, Protein from Toxoplasma gondii)
  • Chain ue (3 kDa, Protein from Toxoplasma gondii)
  • Lsu-23 (88 kDa, RNA from Toxoplasma gondii)
  • Ml40 (32 kDa, Protein from Toxoplasma gondii)
  • Ml156 (22 kDa, Protein from Toxoplasma gondii)
  • Ribosomal protein rpl22 (38 kDa, Protein from Toxoplasma gondii)
  • Lsu-32 (15 kDa, RNA from Toxoplasma gondii)
  • Large ribosomal subunit protein ml43 (23 kDa, Protein from Toxoplasma gondii)
  • Chain uc (2 kDa, Protein from Toxoplasma gondii)
  • Ml161 (51 kDa, Protein from Toxoplasma gondii)
  • Lsu-17 (21 kDa, RNA from Toxoplasma gondii)
  • Ml148 (14 kDa, Protein from Toxoplasma gondii)
  • Rap domain-containing protein (78 kDa, Protein from Toxoplasma gondii)
  • Lsu-1 (528 Da, Protein from Toxoplasma gondii)
  • Lsu-14 (8 kDa, RNA from Toxoplasma gondii)
  • Lsu-21 (11 kDa, RNA from Toxoplasma gondii)
  • Ml102 (43 kDa, Protein from Toxoplasma gondii)
  • Transmembrane protein (22 kDa, Protein from Toxoplasma gondii)
  • Bl32m (10 kDa, Protein from Toxoplasma gondii)
  • Chain ud (1 kDa, Protein from Toxoplasma gondii)
  • Rap domain-containing protein (72 kDa, Protein from Toxoplasma gondii)
  • Putative lsu ribosomal protein l14p (13 kDa, Protein from Toxoplasma gondii)
  • Large ribosomal subunit protein ul3m (56 kDa, Protein from Toxoplasma gondii)
  • Chain uf (1 kDa, Protein from Toxoplasma gondii)
  • Lsu-28 (64 kDa, RNA from Toxoplasma gondii)
  • Large ribosomal subunit protein ml49 (33 kDa, Protein from Toxoplasma gondii)
  • Rap domain-containing protein (113 kDa, Protein from Toxoplasma gondii)
  • Ml158 (26 kDa, Protein from Toxoplasma gondii)
  • Lsu-8 (26 kDa, RNA from Toxoplasma gondii)
  • Rap domain-containing protein (51 kDa, Protein from Toxoplasma gondii)
  • Ml149 (54 kDa, Protein from Toxoplasma gondii)
  • Large ribosomal subunit protein ul24c (48 kDa, Protein from Toxoplasma gondii)
[Show more]
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