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author:"Park YJ"
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Merbecovirus MOW15-22 Spike glycoprotein RBD bound to the P. davyi ACE2
Release date: March 5, 2025
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9c6o
Q-score: 0.544

Ma CB, Liu C, Park YJ, Tang J, Chen J, Xiong Q, Lee J, Stewart C, Asarnow D, Brown J, Tortorici MA, Yang X, Sun YH, Chen YM, Yu X, Si JY, Liu P, Tong F, Huang ML, Li J, Shi ZL, Deng Z, Veesler D, Yan H

Cell (2025) 188 pp. 1693- [ Pubmed: 39922191 DOI: doi:10.1016/j.cell.2024.12.031 ]

Sample:
  • 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
  • Pteronotus davyi ace2 ectodomain (89 kDa, Protein from Pteronotus davyi)
  • Mow15-22 rbd (34 kDa, Protein from Merbecovirus)
  • Mow15-22 rbd bound to the p. davyi ace2 ectodomain (Complex from Sarbecovirus)
[Show more]
3D View
Structure of the prefusion HKU5-19s Spike trimer (conformation 1)
Release date: Feb. 26, 2025
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 9ea0
Q-score: 0.702

Park YJ, Liu C, Lee J, Brown JT, Ma CB, Liu P, Gen R, Xiong Q, Zepeda SK, Stewart C, Addetia A, Craig CJ, Tortorici MA, Alshukairi AN, Starr TN, Yan H, Veesler D

Cell (2025) 188 pp. 1711-1728.e21 [ DOI: doi:10.1016/j.cell.2024.12.032 Pubmed: 39922192 ]

Sample:
  • Folic acid (441 Da, Ligand)
  • Zinc ion (65 Da, Ligand)
  • Linoleic acid (280 Da, Ligand)
  • Water (18 Da, Ligand)
  • Prefusion hku5-19s s trimer (Complex from Homo sapiens)
  • 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
  • Spike glycoprotein (150 kDa, Protein from Pipistrellus bat coronavirus HKU5)
[Show more]
3D View
Structure of the prefusion HKU5-19s Spike trimer (conformation 2)
Release date: Feb. 26, 2025
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 9eh8
Q-score: 0.741

Park YJ, Liu C, Lee J, Brown JT, Ma CB, Liu P, Gen R, Xiong Q, Zepeda SK, Stewart C, Addetia A, Craig CJ, Tortorici MA, Alshukairi AN, Starr TN, Yan H, Veesler D

Cell (2025) 188 pp. 1711-1728.e21 [ DOI: doi:10.1016/j.cell.2024.12.032 Pubmed: 39922192 ]

Sample:
  • Folic acid (441 Da, Ligand)
  • Linoleic acid (280 Da, Ligand)
  • Water (18 Da, Ligand)
  • Prefusion hku5-19s s trimer (Complex from Homo sapiens)
  • 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
  • Spike glycoprotein (150 kDa, Protein from Pipistrellus bat coronavirus HKU5)
[Show more]
3D View
Structure of the HKU5 RBD bound to the P. abramus ACE2 receptor
Release date: Feb. 19, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9d32
Q-score: 0.564

Park YJ, Liu C, Lee J, Brown JT, Ma CB, Liu P, Gen R, Xiong Q, Zepeda SK, Stewart C, Addetia A, Craig CJ, Tortorici MA, Alshukairi AN, Starr TN, Yan H, Veesler D

Cell (2025) 188 pp. 1711-1728.e21 [ DOI: doi:10.1016/j.cell.2024.12.032 Pubmed: 39922192 ]

Sample:
  • Zinc ion (65 Da, Ligand)
  • Spike glycoprotein (29 kDa, Protein from Pipistrellus bat coronavirus HKU5)
  • Angiotensin-converting enzyme (89 kDa, Protein from Pipistrellus abramus)
  • 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
  • Hku5 rbd bound to the p. abramus ace2 receptor (Complex from Homo sapiens)
[Show more]
3D View
Merbecovirus PnNL2018B Spike glycoprotein RBD bound to the P. Nathusii ACE2
Release date: Feb. 19, 2025
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9dak
Q-score: 0.632

Ma CB, Liu C, Park YJ, Tang J, Chen J, Xiong Q, Lee J, Stewart C, Asarnow D, Brown J, Tortorici MA, Yang X, Sun YH, Chen YM, Yu X, Si JY, Liu P, Tong F, Huang ML, Li J, Shi ZL, Deng Z, Veesler D, Yan H

Cell (2025) 188 pp. 1693-1710.e18 [ Pubmed: 39922191 DOI: doi:10.1016/j.cell.2024.12.031 ]

Sample:
  • Zinc ion (65 Da, Ligand)
  • Merbecovirus pnnl2018b spike glycoprotein rbd bound to the p. nathusii ace2 (Complex from Merbecovirus)
  • Water (18 Da, Ligand)
  • 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
  • Ace2 (102 kDa, Protein from Pipistrellus nathusii)
  • Spike glycoprotein receptor binding domain (34 kDa, Protein from Merbecovirus)
[Show more]
3D View
Structure of the HKU5-19s RBD bound to the Bos taurus ACE2 receptor
Release date: Feb. 19, 2025
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9e0i
Q-score: 0.676

Park YJ, Liu C, Lee J, Brown JT, Ma CB, Liu P, Gen R, Xiong Q, Zepeda SK, Stewart C, Addetia A, Craig CJ, Tortorici MA, Alshukairi AN, Starr TN, Yan H, Veesler D

Cell (2025) 188 pp. 1711-1728.e21 [ DOI: doi:10.1016/j.cell.2024.12.032 Pubmed: 39922192 ]

Sample:
  • Angiotensin-converting enzyme 2 (89 kDa, Protein from Bos taurus)
  • Zinc ion (65 Da, Ligand)
  • Spike glycoprotein (29 kDa, Protein from Pipistrellus bat coronavirus HKU5)
  • Hku5-19s rbd bound to the bos taurus ace2 receptor (Complex from Homo sapiens)
  • Water (18 Da, Ligand)
  • 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
[Show more]
3D View
Cryo-EM structure of P.nat ACE2 mutant in complex with MOW15-22 RBD
Release date: Feb. 12, 2025
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 8zuf
Q-score: 0.457

Ma CB, Liu C, Park YJ, Tang J, Chen J, Xiong Q, Lee J, Stewart C, Asarnow D, Brown J, Tortorici MA, Yang X, Sun YH, Chen YM, Yu X, Si JY, Liu P, Tong F, Huang ML, Li J, Shi ZL, Deng Z, Veesler D, Yan H

Cell (2025) 188 pp. 1693- [ Pubmed: 39922191 DOI: doi:10.1016/j.cell.2024.12.031 ]

Sample:
  • Mow15-22 rbd (23 kDa, Protein from Middle East respiratory syndrome-related coronavirus)
  • Zinc ion (65 Da, Ligand)
  • Angiotensin-converting enzyme (90 kDa, Protein from Pipistrellus nathusii)
  • 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
  • P.nat ace2-mow15-22 rbd (Complex from Pipistrellus nathusii)
[Show more]
3D View
Pseudosymmetric protein nanocages: GI4-F7 nanocage
Release date: Jan. 1, 2025
Resolution: 4.4 Å
EM Method: Single-particle

Dowling QM, Park YJ, Fries CN, Gerstenmaier NC, Ols S, Yang EC, Wargacki AJ, Dosey A, Hsia Y, Ravichandran R, Walkey CD, Burrell AL, Veesler D, Baker D, King NP

Nature (2025) 638 pp. 553-561 [ Pubmed: 39695230 DOI: doi:10.1038/s41586-024-08360-6 ]

Sample:
  • Pseudosymmetric protein nanocages git b chain (Protein from synthetic construct)
  • Pseudosymmetric protein nanocages git a chain (Protein from synthetic construct)
  • Pseudosymmetric protein nanocages: gi4-f7 nanocage (Complex from synthetic construct)
  • Pseudosymmetric protein nanocages git c chain (Protein from synthetic construct)
[Show more]
3D View
Pseudosymmetric protein nanocage GI9-F7
Release date: Jan. 1, 2025
Resolution: 6.7 Å
EM Method: Single-particle

Dowling QM, Park YJ, Fries CN, Gerstenmaier NC, Ols S, Yang EC, Wargacki AJ, Dosey A, Hsia Y, Ravichandran R, Walkey CD, Burrell AL, Veesler D, Baker D, King NP

Nature (2025) 638 pp. 553-561 [ Pubmed: 39695230 DOI: doi:10.1038/s41586-024-08360-6 ]

Sample:
  • Pseudosymmetric protein nanocages gi9 c chain (Protein from synthetic construct)
  • Pseudosymmetric protein nanocages gi9 b chain (Protein from synthetic construct)
  • Pseudosymmetric protein nanocages: gi9-f7 nanocage (Complex from synthetic construct)
  • Pseudosymmetric protein nanocages gi9 a chain (Protein from synthetic construct)
[Show more]
3D View
Pseudosymmetric protein nanocage GI16-F7
Release date: Jan. 1, 2025
Resolution: 14.9 Å
EM Method: Single-particle

Dowling QM, Park YJ, Fries CN, Gerstenmaier NC, Ols S, Yang EC, Wargacki AJ, Dosey A, Hsia Y, Ravichandran R, Walkey CD, Burrell AL, Veesler D, Baker D, King NP

Nature (2025) 638 pp. 553-561 [ Pubmed: 39695230 DOI: doi:10.1038/s41586-024-08360-6 ]

Sample:
  • Pseudosymmetric protein nanocage gi16-f7 c chain (Protein from synthetic construct)
  • Pseudosymmetric protein nanocage gi16-f7 a chain (Protein from synthetic construct)
  • Pseudosymmetric protein nanocages: gi9-f7 nanocage (Complex from synthetic construct)
  • Pseudosymmetric protein nanocage gi16-f7 b chain (Protein from synthetic construct)
[Show more]
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