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sample_name:"mitochondrial small ribosomal subunit from Toxoplasma gondii"

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Current Database

  • EMDB [1]

Current status

  • REL [1]

Sample type

  • Complex [1]
  • Ligand [1]
  • Protein [1]
  • RNA [1]

Organism

  • Toxoplasma gondii [1]

EM Method

  • Single-particle [1]

Resolution

  • ≥ 2Å and < 3Å [1]

Release Date

  • 2025 [1]

Author by name

  • Beraldi D [1]
  • Ferreira Silva M [1]
  • Muhleip A [1]
  • Ovciarikova J [1]
  • Sheiner L [1]
  • Shikha S [1]
  • Tobiasson V [1]

Journal

  • NAT COMMUN [1]

Microscope

  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [1]

Film or detector model

  • GATAN K2 QUANTUM (4K X 4K) [1]
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EMD-52348
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Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
Release date: June 11, 2025
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 9hqv
Q-score: 0.431

Shikha S, Tobiasson V, Ferreira Silva M, Ovciarikova J, Beraldi D, Muhleip A, Sheiner L

Nat Commun (2025) 16 pp. 817-817 [ DOI: doi:10.1038/s41467-025-56057-9 Pubmed: 39827269 ]

Sample:
  • Ssu-9 (17 kDa, RNA from Toxoplasma gondii)
  • Ssu-3 (7 kDa, RNA from Toxoplasma gondii)
  • Unk2 (541 Da, Protein from Toxoplasma gondii)
  • Chch domain-containing protein (16 kDa, Protein from Toxoplasma gondii)
  • Ssu-18 (10 kDa, RNA from Toxoplasma gondii)
  • Ms138 (44 kDa, Protein from Toxoplasma gondii)
  • Ms132 (19 kDa, Protein from Toxoplasma gondii)
  • Ssu-2 (9 kDa, RNA from Toxoplasma gondii)
  • Homeodomain-like containing protein (66 kDa, Protein from Toxoplasma gondii)
  • Ms137 (40 kDa, Protein from Toxoplasma gondii)
  • Unk3 (869 Da, Protein from Toxoplasma gondii)
  • Arg-ala-glu-leu-val-ala-ala-gln-val-arg-glu-lys-leu-ala-ile-lys-met-ala-asn-ala-leu-ala (2 kDa, Protein from Toxoplasma gondii)
  • Unk1 (1 kDa, Protein from Toxoplasma gondii)
  • Enoyl-coa hydratase/isomerase family protein (80 kDa, Protein from Toxoplasma gondii)
  • Ssu-4 (15 kDa, RNA from Toxoplasma gondii)
  • Magnesium ion (24 Da, Ligand)
  • Ms135 (21 kDa, Protein from Toxoplasma gondii)
  • Trna e-site (6 kDa, RNA from Toxoplasma gondii)
  • Rap domain-containing protein (86 kDa, Protein from Toxoplasma gondii)
  • Ssu-1 (29 kDa, RNA from Toxoplasma gondii)
  • Ms75 (3 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein s9 (57 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein s8 (14 kDa, Protein from Toxoplasma gondii)
  • Ms124 (30 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein s14 (13 kDa, Protein from Toxoplasma gondii)
  • Chain up (2 kDa, Protein from Toxoplasma gondii)
  • Ssu-10 (29 kDa, RNA from Toxoplasma gondii)
  • Ms125 (100 kDa, Protein from Toxoplasma gondii)
  • Acylphosphatase-like domain-containing protein (27 kDa, Protein from Toxoplasma gondii)
  • Ssu-13 (23 kDa, RNA from Toxoplasma gondii)
  • Ssu-20 (7 kDa, RNA from Toxoplasma gondii)
  • Putative ribosomal protein s17 (14 kDa, Protein from Toxoplasma gondii)
  • Rap domain-containing protein (168 kDa, Protein from Toxoplasma gondii)
  • Ms119 (28 kDa, Protein from Toxoplasma gondii)
  • Ssu-5 (23 kDa, RNA from Toxoplasma gondii)
  • Ssu-12 (8 kDa, RNA from Toxoplasma gondii)
  • Ms136 (50 kDa, Protein from Toxoplasma gondii)
  • Mitochondrial ribosomal protein, ms26 (51 kDa, Protein from Toxoplasma gondii)
  • Ssu-14 (7 kDa, RNA from Toxoplasma gondii)
  • Unk4 (6 kDa, Protein from Toxoplasma gondii)
  • Ssu-19 (3 kDa, RNA from Toxoplasma gondii)
  • Putative ribosomal protein s18 (84 kDa, Protein from Toxoplasma gondii)
  • Putative ribosomal protein s11 (43 kDa, Protein from Toxoplasma gondii)
  • Zinc ion (65 Da, Ligand)
  • Putative 30s ribosomal protein s15 (44 kDa, Protein from Toxoplasma gondii)
  • Ssu-21 (17 kDa, RNA from Toxoplasma gondii)
  • Chain uc (9 kDa, RNA from Toxoplasma gondii)
  • Small ribosomal subunit protein ms29 (63 kDa, Protein from Toxoplasma gondii)
  • Chain un (2 kDa, Protein from Toxoplasma gondii)
  • Mitochondrial small ribosomal subunit from toxoplasma gondii (Complex from Toxoplasma gondii)
  • Small ribosomal subunit protein ms35 mitochondrial conserved domain-containing protein (63 kDa, Protein from Toxoplasma gondii)
  • Ssu-17 (18 kDa, RNA from Toxoplasma gondii)
  • Ms23 (41 kDa, Protein from Toxoplasma gondii)
  • Ssu-7 (8 kDa, RNA from Toxoplasma gondii)
  • Us13m (12 kDa, Protein from Toxoplasma gondii)
  • Ribosomal protein, us2m (18 kDa, Protein from Toxoplasma gondii)
  • Putative 30s ribosomal protein s16 (19 kDa, Protein from Toxoplasma gondii)
  • Dna double-strand break repair rad50 atpase (69 kDa, Protein from Toxoplasma gondii)
  • Ms128 (34 kDa, Protein from Toxoplasma gondii)
  • Adenosine-5'-triphosphate (507 Da, Ligand)
  • Ssu-6 (38 kDa, RNA from Toxoplasma gondii)
  • Ap2 domain transcription factor ap2ix-6 (47 kDa, Protein from Toxoplasma gondii)
  • Ssu-15 (5 kDa, RNA from Toxoplasma gondii)
  • Ms120 (75 kDa, Protein from Toxoplasma gondii)
  • Ms131 (48 kDa, Protein from Toxoplasma gondii)
  • Unknown peptide (1 kDa, Protein from Toxoplasma gondii)
  • Pentatricopeptide repeat domain-containing protein (74 kDa, Protein from Toxoplasma gondii)
  • Ms92 (17 kDa, Protein from Toxoplasma gondii)
  • Putative mitochondrial ribosomal protein s6-2 (19 kDa, Protein from Toxoplasma gondii)
  • Chain uq (2 kDa, Protein from Toxoplasma gondii)
  • Ssu-8 (8 kDa, RNA from Toxoplasma gondii)
  • Putative 30s ribosomal protein s12 (66 kDa, Protein from Toxoplasma gondii)
  • Ms133 (31 kDa, Protein from Toxoplasma gondii)
  • Ms121 (34 kDa, Protein from Toxoplasma gondii)
  • Ssu-11 (36 kDa, RNA from Toxoplasma gondii)
  • Mitochondrial mrna-processing protein cox24 c-terminal domain-containing protein (30 kDa, Protein from Toxoplasma gondii)
  • Chain uo (2 kDa, Protein from Toxoplasma gondii)
  • Ribosomal protein, bs21m (28 kDa, Protein from Toxoplasma gondii)
  • Chain uh (5 kDa, Protein from Toxoplasma gondii)
  • Putative 30s ribosomal protein s5 (127 kDa, Protein from Toxoplasma gondii)
  • Ms45 (59 kDa, Protein from Toxoplasma gondii)
  • Ms34 (34 kDa, Protein from Toxoplasma gondii)
  • Dnaj domain-containing protein (25 kDa, Protein from Toxoplasma gondii)
  • Ms117 (60 kDa, Protein from Toxoplasma gondii)
  • Us10m (26 kDa, Protein from Toxoplasma gondii)
  • Macro domain-containing protein (75 kDa, Protein from Toxoplasma gondii)
  • Thioredoxin domain-containing protein (102 kDa, Protein from Toxoplasma gondii)
  • Ssu-16 (10 kDa, RNA from Toxoplasma gondii)
  • Gly-arg-ser-lys-val-leu-ile-arg-arg-leu-lys-glu-arg-ala-lys-lys-glu-ala-glu-lys-lys-ala (2 kDa, Protein from Toxoplasma gondii)
  • Atp-dependent clp protease proteolytic subunit,related protein (116 kDa, Protein from Toxoplasma gondii)
  • Chain uj (5 kDa, Protein from Toxoplasma gondii)
[Show more]
Sort by: Download
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Display:
Statistics
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Preview first 10
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Filter By

Current Database

  • EMDB [1]

Current status

  • REL [1]

Sample type

  • Complex [1]
  • Ligand [1]
  • Protein [1]
  • RNA [1]

Organism

  • Toxoplasma gondii [1]

EM Method

  • Single-particle [1]

Resolution

  • ≥ 2Å and < 3Å [1]

Release Date

  • 2025 [1]

Author by name

  • Beraldi D [1]
  • Ferreira Silva M [1]
  • Muhleip A [1]
  • Ovciarikova J [1]
  • Sheiner L [1]
  • Shikha S [1]
  • Tobiasson V [1]

Journal

  • NAT COMMUN [1]

Microscope

  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [1]

Film or detector model

  • GATAN K2 QUANTUM (4K X 4K) [1]